Services

We routinely provide assistance with the analysis of various NGS applications (RNAseq, ChIPseq, ATACseq to name a few) as well as single-cell RNAseq. We will also analyse data from microarray platforms such as gene expression arrays. In all cases we recommend that you come as see us so we can check your design, but also so that we are aware data will be forth-coming.

With advances in technology, new methods and techniques are constantly being developed, meaning that we also need to learn how to handle data coming from these new applications. If you are planning on generating any such data, please see us as soon as possible so we can prepare. This will reduce the waiting time between data production and getting results.

We also provide a computation platform hosted at Lunarc which is available to for those to use who have some experience of bioinformatics. Please see us and we will show you how to apply for access, and how to get started.

We can do the following:

• 1-year membership fee to the SCC bioinformatics hardware at COSMOS-SENS: 30k SEK per user
  • This fee covers on-boarding, usage of the pipelines, help with pipeline/software installs, and time needed to maintain the system and manage users.
• One month Full-Time, project time: 75k SEK for members of the Lund Stem Cell Center
• One month Full-Time, project time: 100k SEK for external researchers

In all cases we will help to submit your data to GEO/ArrayExpress.

Any further analyses on your data will be performed time-permitting. Of course, if there are other uses of NGS which are not covered here please come and see us, and if you have any bioinformatics related issues/problems (such as reviewer comments) you are welcome to see us where we will help you as best as we can.