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Computational Genomics

Soneji group

Thousands of single-cells can be profiled using next generation sequencing technologies, and this leads to a massive amount of data which needs processing and analysing to determine the underlying biology of the samples assayed. Key to this is data visualisation, and a common step is to generate "maps" of cells which make the data human-comprehensible. The maps are often constructed in three dimension, but current methods to visualise 3D data are poor.

Our lab is pioneering the use of virtual reality (VR) to display big-data in a way which is immersive and fully interactive. Researchers have full 3D access to all aspects of their data, and an array of virtual tools to analyse it.

CellexalVR is a virtual reality platform for the visualisation and analysis of single-cell gene expression data.

Impact

List of Team Soneji's publications


Team

(name linked to profile in Lund University research portal)

Shamit Soneji

Principal Investigator, Shamit [dot] Soneji [at] med [dot] lu [dot] se

Stefan Lang

Postdoc, Stefan [dot] Lang [at] med [dot] lu [dot] se

Oscar Legetth

Software Engineer, Oscar [dot] Legetth [at] med [dot] lu [dot] se

Johan Rodhe

Software Engineer, Johan [dot] Rodhe [at] med [dot] lu [dot] se

Shamit Soneji

 

Shamit Soneji

Principal Investigator
PhD, Assistant Professor
Division of Molecular Hematology
Phone: +46 46 222 08 72
Email: shamit [dot] soneji [at] med [dot] lu [dot] se

Webpage:  https://sonejilab.med.lu.se/

Profile in Lund University research portal