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Current topics in bioinformatics

Scope

The Research School in Stem Cell Biology and the StemTherapy Bioinformatics Core Facility have developed a new bioinformatics initiative in an effort to further improve the bioinformatics expertise of students and postdocs within the Stem Cell Center (SCC).

The purpose of this new initiative is two-fold: It will provide all SCC employees with clear instructions what resources for analysis, data interpretation and collaboration the Bioinformatics Core can provide; and it will also offer focused training sessions for PhD students and postdocs affiliated with SCC. During these focused workshops, trainees will learn about specific application areas with relevant examples in smaller focus/study groups. One purpose of these study groups is to encourage the establishment of local networks to maintain and pass-on the knowledge obtained during previous bioinformatics courses, thereby promoting an interdisciplinary and collaborative environment.

Launch of the bioinformatics initiative 2019

When and where? 

November 13, 2018 at 13.00 – 14.30 at Segerfalk Lecture Hall, BMC A10
No registration required, open to everyone at SCC.

Program

13.00 – 13.10
Introduction to the new bioinformatics initiative: purpose and overview
Christine Karlsson, Executive Director Research School in Stem Cell Biology

13.10 - 14.00
The bioinformatics environment in Lund: an overview of internal and external resources
Shamit Soneji, Director of the StemTherapy Bioinformatics Core Facility

14.00 – 14.30
Coffee and discussion


“Current topics in bioinformatics” workshops

January 22, 2019

Basic Unix/Linux and compute cluster usage
Read more and apply

January 23, 2019

R programming foundations I
Read more and apply

January 29-30, 2019

R programming foundations II
Read more and apply

February 5-6, 2019

Python programming foundations
Read more and apply

February 12, 2019

Single cell RNA sequencing data analysis
Read more and apply

March 4, 2019

Bulk RNA sequencing data analysis
Read more and apply

March 5, 2019

ATAC-seq and ChIP-seq
Read more and apply

March 19, 2019

Genomic data visualization
Read more and apply

November 7, 2019

Computational proteomics
Read more and apply


Application - key dates

  • Deadline: December 5, 2018
  • Notification of application results: December 13, 2018

 

Page Manager:

Contact

Christine Karlsson
Executive Director | Research School in Stem Cell Biology

Email: Christine [dot] Karlsson [at] med [dot] lu [dot] se

Shamit Soneji
Director | StemTherapy Bioinformatics Core Facility

Email: Shamit [dot] Soneji [at] med [dot] lu [dot] se

 

News

Drop-in connected to the bioinformatics initiative

The StemTherapy Bioinformatics Core Facility offers a weekly drop-in providing hands-on advice on R-programming related matters, including re-cap of course material covered in the workshops.

When?
Wednesdays at 9.00 – 11.00 (start date: May 15, 2019)

Where?
Bioinformatics Core Facility at BMC B12

Contact: Shamit [dot] Soneji [at] med [dot] lu [dot] se


Python study group

Closed study group for participants of the Python workshop on February 5-6, 2019.

For more information, please contact the study group leader Parashar Dhapola.

Contact: Parashar [dot] Dhapola [at] med [dot] lu [dot] se