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MACSima – New Imaging Platform

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MACSima, developed by Miltenyi Biotec, is our new fully automated spatial biology system. It is capable of mapping hundreds of protein and RNA biomarkers within a single tissue section at subcellular resolution. The platform enables highly multiplexed spatial analysis of proteins directly in tissue and cell samples, providing new opportunities to explore cellular identity, organization, and interactions while preserving spatial context.

The platform automates a continuous loop of staining, high-resolution imaging, and gentle signal erasure. By utilizing photobleaching or specialized release mechanisms instead of harsh chemicals, the system erases fluorescent signals without damaging the delicate tissue morphology. This gentle approach allows a single sample—whether it is FFPE, frozen tissue, or an organoid—to undergo dozens of consecutive cycles, enabling true sequential multiomics by analyzing both spatial transcriptomics and proteomics on the exact same slide. 

To process the massive amounts of imaging data generated by these experiments, the platform integrates with MACS iQ View software. This specialized software translates complex image pixels into actionable biological insights through automated cell segmentation, phenotypic clustering, and deep spatial microenvironment analysis.

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